lumafly.

ML segmentation · electron microscopy

Measurement software for electron microscopy.

Lumafly builds Atlas - a particle analysis application that detects every particle in SEM and TSEM micrographs and turns their size, shape, and distribution into reportable statistics in minutes. Any instrument, your infrastructure.

Email us about Atlas See how it works

Vendor agnostic

Works on images from any instrument

No tie-in to a microscope maker, an acquisition suite, or a file format. SEM and TSEM micrographs from mixed fleets go through the same pipeline and come out comparable.

Deploy anywhere

On-prem, air-gapped, or cloud

The same application runs inside your own network with no data leaving it, or managed on Azure, AWS, or GCP. Your infrastructure rules, not ours.

Fast

Minutes, not manual hours

Hours of manual labelling become minutes of processing and review - at a fraction of the cost, and repeatable every time you run it.

atlas. - our product

Particle detection, universal and unbiased.

Atlas replaces slow, manual particle measurement with a custom segmentation pipeline. Results stay consistent and unbiased across every image, so analysis is faster, more reliable, and fully reproducible.

atlas / workbench · review, filter and edit
The Atlas workbench: a micrograph with detected particles outlined, beside per-particle measurements and filter controls.
  1. 01 · Import & preprocess
  2. 02 · Review, filter & edit bounds
  3. 03 · Compare statistics & export

What Atlas does

Custom segmentation pipeline

A purpose-built pipeline resolves touching and overlapping particles across SEM & TSEM micrographs.

Consistent & unbiased

The same criteria apply to every particle and image - no operator drift, no subjective bias.

You stay in control

Set thresholds, preview results, and hand-edit any segmentation before you commit.

Adapts to your data

Configurable, extendable preprocessing pipelines tune to your imaging modality and use case.

Statistics & export

Min & max Feret, AED, circularity, custom metrics - the inputs for nanomaterial classification.

Deployment & data security

On-prem · air-gapped

data never leaves

Runs entirely inside your network. No image or measurement data ever leaves your system.

Cloud

Azure · AWS · GCP

Managed deployment on your provider of choice for fast rollout and easy scaling.

Export the results

CSV · XLSX · custom

Per-particle tables and summary statistics export to CSV, XLSX, or a format you specify, for existing reporting templates.

Connect your systems

API · LIMS/ELN · MCP

A documented API links Atlas to your LIMS, ELN, or data warehouse. MCP tools can optionally expose the same operations to agentic workflows - off by default.

How we work together

  1. 01

    Intro call & walkthrough

    We walk you through the app, map your imaging techniques and sample types, and align on needs, timeline, and how we'll work together.

  2. 02

    Analytical phase

    We analyse representative images, assess feasibility, and calibrate preprocessing for your data.

  3. 03

    Proof-of-concept

    A working model on your own micrographs, validated against your measurements before any rollout.

  4. 04

    Production deployment

    A fully functioning web-based application, deployed in the cloud or inside your own environment - ready for daily use.

The team

Who you work with

Jonáš Tichý

Developer

Builds Atlas end to end - the segmentation pipeline, the workbench, and the deployments that run it.

Tomáš Jurásek

Domain expert & analyst

Brings the microscopy side - sample types, measurement practice, and validating what Atlas reports.

Get in touch

Send us a few micrographs and we'll show you what Atlas does with them.

Tell us about your imaging techniques and sample types, and where you need Atlas to run.

hello@lumafly.eu